Microbial Characteristics of Lower Respiratory Tract Infections in Patients Referred from Primary Care Hospitals

Authors

  • Thanh Nguyen-Van Department of Pulmonology, Can Tho Central General Hospital, Can Tho City 900000, Vietnam.
  • Van Pham-Hung Department of Microbiology, Nam Khoa Biotek Laboratory, Ho Chi Minh City 700000, Vietnam.
  • Ngoc Tran-Van Ngoc Minh Clinic, Ho Chi Minh City 700000, Vietnam.
  • Duy Nguyen-Dinh Department of Pulmonology, Pham Ngoc Thach Hospital, Ho Chi Minh City 700000, Vietnam.
  • Thuy Cao-Thi-My Department of Pulmonology, Can Tho Central General Hospital, Can Tho City 900000, Vietnam.
  • Huong Le-Thi-Thu Department of Pulmonology, Gia Dinh People’s Hospital, Ho Chi Minh City 700000, Vietnam.
  • Thu Vo-Pham-Minh Faculity of Medicine, Can Tho University of Medicine and Pharmacy, Can Tho City 900000, Vietnam.
  • Phu Tran-Nguyen Trong Faculity of Medicine, Can Tho University of Medicine and Pharmacy, Can Tho City 900000, Vietnam. and Faculty of Medicine, Chulalongkorn University, Bangkok 10400, Thailand.
  • Van Duong-Thi-Thanh Faculity of Medicine, Can Tho University of Medicine and Pharmacy, Can Tho City 900000, Vietnam.

DOI:

https://doi.org/10.31584/jhsmr.20231004

Keywords:

antibiotic, culture, lower respiratory tract infections, pathogens, real-time PCR

Abstract

Objective: This study investigated the microbiological characteristics of severe lower respiratory tract infection patients not respond to initial treatment, and were transferred to a tertiary-level hospital.
Material and Methods: This was a multicenter, prospective study conducted across four hospitals: Cho Ray, Pham Ngoc Thach, Gia Dinh People’s Hospital, and Can Tho Central General Hospital. Sputum specimens were collected shortly after admission and subjected to culture and real-time PCR testing.
Results: Out of the 252 patients, 170 (67.4%) met the criteria for analysis and identification of pathogenic microorganisms. The most frequently isolated pathogens were Streptococcus pneumoniae (S. pneumonia) and Haemophilus influenzae (H. influenzae), comprising of 27.0% and 13.1%, respectively. Antibiotic susceptibility testing was conducted on 55 patients (32.3%). Among these cases, there were 16 instances of S. pneumoniae, 10 cases of Staphylococcus aureus (S. aureus), 10 cases of Pseudomonas aeruginosa (P. aeruginosa), 14 cases of gram-negative enteric bacteria, 2 cases of H. influenzae, 1 case of Moraxella catarrhalis (M. catarrhalis), 1 case of Enterococcus faecium, and 1 case of M. pneumoniae. The antibiogram results revealed significant findings; including a 70% prevalence of extended-spectrum beta-lactamase and 90% occurrence of Methicillin-Resistant Staphylococcus aureus. The data also indicated high resistance rates; such as 90% resistance to erythromycin, 40-80% to ciprofloxacin, 30-80% to ceftazidime, and 30-40% to imipenem.
Conclusion: Pathogens associated with LRTIs referred from primary care hospitals encompass S. pneumonia, H. influenza, and S. aureus. At our facility, piperacillin, imipenem, amikacin, vancomycin, and linezolid emerged as the most effective antibiotics for addressing these LRTIs.

References

Pak A, Adegboye OA, Eisen DP, McBryde ES. Hospitalisations related to lower respiratory tract infections in Northern Queensland. Aust N Z J Public Health 2021;45:430-6.

Lovering AM, MacGowan AP, Anderson P, Irwin P. Epidemiology and resource utilization for patients hospitalized for lower respiratory tract infection. Clin Microbiol Infect 2001;7:666-70.

Vijay S, Dalela G. Prevalence of LRTI in patients presenting with productive cough and their antibiotic resistance pattern. J Clin Diagn Res 2016;10:DC09-12.

Butler CC, Hood K, Verheij T, Little P, Melbye H, Nuttall J, et al. Variation in antibiotic prescribing and its impact on recovery in patients with acute cough in primary care: prospective study in 13 countries. BMJ 2009;338:b2242.

Little P, Stuart B, Moore M, Coenen S, Butler CC, Godycki-Cwirko M, et al. Amoxicillin for acute lower-respiratory-tract infection in primary care when pneumonia is not suspected: a 12-country, randomised, placebo-controlled trial. Lancet Infect Dis 2013;13:123-9.

Goossens H, Ferech M, Vander Stichele R, Elseviers M, ESAC Project Group. Outpatient antibiotic use in Europe and association with resistance: a cross-national database study. Lancet 2005;365:579-87.

Coenen S, Ferech M, Haaijer-Ruskamp FM, Butler CC, Vander Stichele RH, Verheij TJM, et al. European Surveillance of Antimicrobial Consumption (ESAC): quality indicators for outpatient antibiotic use in Europe. Qual Saf Health Care 2007;16:440-5.

Löffler C, Altiner A, Diener A, Berner R, Feldmeier G, Helbig C, et al. Hospitalization for acute respiratory tract infection in a low-antibiotic-prescribing setting: cross-sectional data from general practice. Antibiotics (Basel) 2020;9:653.

García-Vázquez E, Marcos MA, Mensa J, Roux AD, Puig J, Font C, et al. Assessment of the usefulness of sputum culture for diagnosis of community-acquired pneumonia using the PORT predictive scoring system. Arch Intern Med 2004;164:1807-11.

Clinical and Laboratory Standards Institute (CLSI). Performance standards for antimicrobial disk susceptibility tests; approved standard. 12th ed. Wayne, PA: Clinical and Laboratory Standards Institute; 2015.

Helou M, Mahdi A, Daoud Z, Mokhbat J, Farra A, Nassar E, et al. Epidemiology of community-acquired respiratory tract infections in patients admitted at the emergency departments. Trop Med Infect Dis 2022;7:233.

Krishnamurthy A, Palombo E. Current therapeutics and prophylactic approaches to treat pneumonia. In: Kon K, Rai M, editors. The Microbiology of Respiratory System Infections. New York: Academic Press; 2016;1:p263-79.

Liam CK. Community acquired pneumonia - a Malaysian perspective. Med J Malaysia 2005;60:249-66.

Otani K, Saito M, Okamoto M, Tamaki R, Saito-Obata M, Kamigaki T, et al. Incidence of lower respiratory tract infection and associated viruses in a birth cohort in the Philippines. BMC Infect Dis 2022;22:313.

Sitthikarnkha P, Uppala R, Niamsanit S, Sumitr S, Thepsuthammarat K, Techasatian L, et al. Epidemiology of acute lower respiratory tract infection hospitalizations in Thai children: A 5-year national data analysis. Influenza Other Respi Viruses 2022;16:142-50.

Zhu X, Ye T, Zhong H, Luo Y, Xu J, Zhang Q, et al. Distribution and drug resistance of bacterial pathogens associated with lower respiratory tract infection in children and the effect of COVID-19 on the distribution of pathogens. Can J Infect Dis Med Microbiol 2022;1181283.

Chansareewittaya K, Krajangcharoensakul S. The occurrence of antibiotic resistant bacteria contamination in sub-district health-promoting hospitals in Chiang Rai, Thailand. J Health Sci Med Res 2022;40:459-73.

Woodhead M, Blasi F, Ewig S, Gagau J, Huchon G, Leven M, et al. Guidelines for the management of adult lower respiratory tract infections--full version. Clin Microbiol Infect 2011;17:1-59.

Santella B, Serretiello E, De Filippis A, Veronica F, Iervolino D, Dell’Annunziata F, et al. Lower respiratory tract pathogens and their antimicrobial susceptibility pattern: a 5-year study. Antibiotics (Basel) 2021;10:851.

Raghubanshi BR, Karki BMS. Bacteriology of sputum samples: a descriptive cross-sectional study in a tertiary care hospital. JNMA J Nepal Med Assoc 2020;58:24-8.

Gadsby NJ, McHugh MP, Russell CD, Mark H, Conway Morris A, Laurenson IF, et al. Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in lower respiratory tract infections. Clin Microbiol Infect 2015;21:e1-788.

Serigstad S, Markussen D, Grewal HMS, Ebbesen M, Kommedal Ø, Heggelund L, et al. Rapid syndromic PCR testing in patients with respiratory tract infections reduces time to results and improves microbial yield. Sci Rep 2022;12;326.

Singh S, Sharma A, Nag VL. Bacterial pathogens from lower respiratory tract infections: a study from Western Rajasthan. J Family Med Prim Care 2020;9:1407-12.

Do Tran H, Chi Nguyen N, Duong Nguyen H, Thi Dieu Nguyen H, Thi Thuy Nguyen T, Hong Nguyen P, et al. The situation of antibiotic resistance in klebsiella pneumoniae and carbapenemase-producing klebsiella pneumoniae in Vietnam: A cross-sectional study. J Health Sci Med Res 2023:e2023964.

Gebre AB, Begashaw TA, Ormago MD. Bacterial profile and drug susceptibility among adult patients with community acquired lower respiratory tract infection at tertiary hospital, Southern Ethiopia. BMC Infect Dis 2021;21:440.

Duong Thi Thanh V, Nguyen T, Ngo Van T, Vo Pham Minh T. Prevalence and determinants of antimicrobial resistance of gram-negative bacteria in intensive care unit. Pharm Sci Asia 2022;49:568-75.

Downloads

Published

2024-03-28

How to Cite

1.
Nguyen-Van T, Pham-Hung V, Tran-Van N, Nguyen-Dinh D, Cao-Thi-My T, Le-Thi-Thu H, Vo-Pham-Minh T, Tran-Nguyen Trong P, Duong-Thi-Thanh V. Microbial Characteristics of Lower Respiratory Tract Infections in Patients Referred from Primary Care Hospitals. J Health Sci Med Res [Internet]. 2024 Mar. 28 [cited 2024 May 3];42(3):e20231004. Available from: https://he01.tci-thaijo.org/index.php/jhsmr/article/view/269863

Issue

Section

Original Article